Some interest. A stronger README and CI would help.
:book: Biomedical knowledge mining using GOSemSim and clusterProfiler
Documentation
0
No README found in the repository.
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No install instructions found in the README (−45 pts).
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No license detected.
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No CONTRIBUTING.md found (−47 pts base + up to −53 pts more for content).
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Engineering
16
No tests detected anywhere in the repository.
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No linter or formatter config found.
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No dependency lockfile found (−70 pts).
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No issue or PR templates found (−100 pts).
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CI is configured (.github/workflows/publish-book.yml).
Project health
68
No dependency manifest detected at root.
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Repository has a description.
Actively maintained (pushed within the last month).
.gitignore present.
Repository health signals
Activity, community, and responsiveness at scan time
Activity
- —Commits (30d / 90d)
- 30Forks
- 0Releases
Community
- —Community health
- —authors own >50% of commits
- 94Watchers
Responsiveness
- 2hMedian issue response
- 21hMedian PR merge time
- 20Open issues
Repository files36 root entries
- .githubGood: CI is configured (.github/workflows/publish-book.yml).
- cache
- datasets
- figures
- _common.R
- _quarto.yml
- .gitignoreGood: .gitignore present.
- 01-semantic-similarity.qmd
- 011-GOSemSim.qmd
- 012-DOSE-semantic-similarity.qmd
- 013-meshes-semantic-similarity.qmd
- 02-Enrichment.qmd
- 021-go.qmd
- 022-kegg.qmd
- 023-other-dbs.qmd
- 024-reactome.qmd
- 025-do-enrichment.qmd
- 026-meshes-enrichment.qmd
- 027-universal-enrichment.qmd
- 028-chipseeker.qmd
- 029-compareCluster.qmd
- appendix.qmd
- bayesian-term-selection.qmd
- clusterProfiler-diagram.R
- COVID19_GeneSets.gmt
- dplyr.qmd
- enrichplot.qmd
- FAQ.qmd
- index.qmd
- interpretation.qmd
- Makefile
- misc.qmd
- PPI.qmd
- references.bib
- todo.md
- utilities.qmd