Some interest. A stronger README and CI would help.
This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.
Documentation
58
No CONTRIBUTING.md found (−47 pts base + up to −53 pts more for content).
→ Add a CONTRIBUTING.md telling newcomers how to get involved. Include setup, code style, test, and PR instructions.
No install instructions found in the README (−45 pts).
→ Add a section showing how to install dependencies.
README is present.
A license file is present.
Engineering
0
No tests detected anywhere in the repository.
→ Add automated tests. They prove the code works and give contributors confidence to make changes.
No CI configuration detected in this repository.
→ If your CI lives elsewhere (a private repo that builds this one) or this project is itself a CI/CD tool, mark this check Not Applicable. Otherwise add a GitHub Actions workflow that runs tests on each push. It takes 15 minutes and reassures contributors their changes won't break things.
No linter or formatter config found.
→ Add a linter config such as .eslintrc.json, .prettierrc, ruff.toml, or .golangci.yml to enforce consistent code style.
No dependency lockfile found (−70 pts).
→ Commit the lockfile for this project's package manager so installs produce the same dependency versions everywhere.
No issue or PR templates found (−100 pts).
→ Add .github/ISSUE_TEMPLATE/ with bug_report.md and feature_request.md to guide contributors. It dramatically improves issue quality.
Project health
68
No dependency manifest detected at root.
→ Add a manifest (package.json, pyproject.toml, Cargo.toml, go.mod, etc.) so others can install dependencies in one command.
Repository has a description.
Actively maintained (pushed within the last month).
.gitignore present.
Repository health signals
Activity, community, and responsiveness at scan time
Activity
- —Commits (30d / 90d)
- 17Forks
- 0Releases
Community
- —Community health
- —authors own >50% of commits
- 94Watchers
Responsiveness
- 4hMedian issue response
- —Median PR merge time
- 1Open issues
Repository files8 root entries
- docs
- toolsGood: A license file is present.
- .gitignoreGood: .gitignore present.
- README.mdGood: README is present.Good: README is well structured with multiple sections.Issue: No screenshots or images in the README (−20 pts).Fix: Add a GIF, screenshot, or logo image. It is the fastest way to show what your project does.Good: README has code examples.Good: README links to a live demo or deployed app.Issue: No status badges in the README (−10 pts).Fix: Add CI/build status badges from shields.io or your CI provider to signal project health.Issue: No install instructions found in the README (−45 pts).Fix: Add a section showing how to install dependencies.Good: README documents how to run the project.
- S01-Downloading-Slides-from-TCGA.ipynb
- S02-Reorganizing-Slides-at-Patient-Level.ipynb
- S03-Segmenting-and-Patching-Slides.ipynb
- S04-Extracting-Patch-Features.ipynb