0
/ 100
GradeF
Some interest. A stronger README and CI would help.
Computational Anatomy Toolbox for SPM
MATLAB56GPL-2.0today
Documentation
52
Contributing guide5pt
0
No CONTRIBUTING.md found (−47 pts base + up to −53 pts more for content).
→ Add a CONTRIBUTING.md telling newcomers how to get involved. Include setup, code style, test, and PR instructions.
Install and run instructions9pt
45
README documents how to install the project.
README12pt
55
README is present.
License6pt
100
Licensed under GPL-2.0.
Engineering
16
Tests18pt
0
No tests detected anywhere in the repository.
→ Add automated tests. They prove the code works and give contributors confidence to make changes.
Linting and formatting5pt
0
No linter or formatter config found.
→ Add a linter config such as .eslintrc.json, .prettierrc, ruff.toml, or .golangci.yml to enforce consistent code style.
Reproducibility6pt
0
No dependency lockfile found (−70 pts).
→ Commit the lockfile for this project's package manager so installs produce the same dependency versions everywhere.
Issue and PR templates6pt
0
No issue or PR templates found (−100 pts).
→ Add .github/ISSUE_TEMPLATE/ with bug_report.md and feature_request.md to guide contributors. It dramatically improves issue quality.
CI/CD14pt
57
CI is configured (.github/workflows/tests.yml).
Project health
68
Dependency manifest6pt
0
No dependency manifest detected at root.
→ Add a manifest (package.json, pyproject.toml, Cargo.toml, go.mod, etc.) so others can install dependencies in one command.
Repository metadata5pt
100
Repository has a description.
Activity5pt
100
Actively maintained (pushed within the last month).
Housekeeping3pt
100
.gitignore present.
Repository health signals
Activity, community, and responsiveness at scan time
Activity
- -Commits (30d / 90d)
- 8Forks
- 5Releaseslatest 2mo ago
Community
- -Community health
- -authors own >50% of commits
- 56Watchers
Responsiveness
- 14d 18hMedian issue response
- <1hMedian PR merge time
- 13Open issues
Repository files457 root entries
- .githubGood: CI is configured (.github/workflows/tests.yml).
- atlases_surfaces
- atlases_surfaces_32k
- batches
- CAT.glnx86
- CAT.maca64
- CAT.maci64
- CAT.w32
- catQC
- check_pipeline
- development
- doc
- internal
- mexmaca
- mexmaci
- standalone
- templates_MNI152NLin2009cAsym
- templates_surfaces
- templates_surfaces_32k
- .gitattributes
- .gitignoreGood: .gitignore present.
- Amap.c
- Amap.h
- Bayes.c
- BayesMex.c
- BayesMex.m
- cat_amap.c
- cat_amap.m
- cat_amap.mexa64
- cat_amap.mexmaca64
- cat_amap.mexmaci64
- cat_amap.mexw64
- cat_batch_bids.sh
- cat_batch_cat.m
- cat_batch_cat.sh
- cat_batch_long.m
- cat_batch_long.sh
- cat_batch_spm.m
- cat_batch_spm.sh
- cat_check_system_output.m
- cat_check.m
- cat_conf_catsimple.m
- cat_conf_extopts.m
- cat_conf_factorial.m
- cat_conf_long.m
- cat_conf_nonlin_coreg.m
- cat_conf_opts.m
- cat_conf_output.m
- cat_conf_ROI.m
- cat_conf_stools.m
- cat_conf_stoolsexp.m
- cat_conf_tools.m
- cat_debug.m
- cat_defaults.m
- cat_display_matlab_PID.m
- cat_get_defaults.m
- cat_install_atlases.m
- cat_install_tfce.m
- cat_io_addwarning.m
- cat_io_BIDS.m
- cat_io_cgw2seg.m
- cat_io_checkdepfiles.m
- cat_io_checkinopt.m
- cat_io_cmd.m
- cat_io_colormaps.m
- cat_io_contains.m
- cat_io_cprintf.m
- cat_io_csv.m
- cat_io_data2mat.m
- cat_io_file_move.m
- cat_io_FreeSurfer.m
- cat_io_handle_pre.m
- cat_io_img2nii.m
- cat_io_json.m
- cat_io_lazy.m
- cat_io_load.m
- cat_io_matlabversion.m
- cat_io_mergeStruct.m
- cat_io_remat.m
- cat_io_report.m
- cat_io_rerun.m
- cat_io_rmdir.m
- cat_io_seg2cgw.m
- cat_io_send_to_server.m
- cat_io_senderrormail.m
- cat_io_strrep.m
- cat_io_struct2cell.m
- cat_io_struct2table.m
- cat_io_updateStruct.m
- cat_io_volctype.m
- cat_io_writenii.m
- cat_io_xml.m
- cat_io_xml2csv.m
- cat_long_APP.m
- cat_long_biascorr.m
- cat_long_createTPM.m
- cat_long_main.m
- cat_long_multi_run.m
- cat_long_report.m
- cat_long_shoot_defaults.m
- cat_main_amap.m
- cat_main_amap1639.m
- cat_main_APRG.m
- cat_main_clean_gwc.m
- cat_main_clean_gwc1639.m
- cat_main_cleanup.m
- cat_main_correctmyelination.m
- cat_main_gcut_DEV.m
- cat_main_gcut.m
- cat_main_gintnorm.m
- cat_main_gintnorm1639.m
- cat_main_gintnormi.m
- cat_main_LAS.m
- cat_main_LASsimple.m
- cat_main_registration.m
- cat_main_report.m
- cat_main_reportcmd.m
- cat_main_reportfig.m
- cat_main_reportstr.m
- cat_main_roi.m
- cat_main_update_intnorm.m
- cat_main_updateSPM.m
- cat_main_updateSPM1639.m
- cat_main_updateWMHs.m
- cat_main_write.m
- cat_main.m
- cat_main1639.m
- cat_ornlm.c
- cat_ornlm.m
- cat_ornlm.mexa64
- cat_ornlm.mexmaca64
- cat_ornlm.mexmaci64
- cat_ornlm.mexw64
- cat_parallelize.m
- cat_plot_boxplot.m
- cat_plot_circular.m
- cat_plot_cov.m
- cat_plot_glassbrain.m
- cat_plot_histogram.m
- cat_plot_scatter.m
- cat_progress_bar.m
- cat_roi_fun.m
- cat_roi_roi2surf.m
- cat_roi_values2surf.m
- cat_run_job_APP_init.m
- cat_run_job_APP_init1070.m
- cat_run_job_APP_SPMinit.m
- cat_run_job_APRGs.m
- cat_run_job.m
- cat_run_job1639.m
- cat_run_newcatch.m
- cat_run.m
- cat_sanlm.c
- cat_sanlm.m
- cat_sanlm.mexa64
- cat_sanlm.mexmaca64
- cat_sanlm.mexmaci64
- cat_sanlm.mexw64
- cat_simple.m
- cat_spm_affreg.m
- cat_spm_preproc_run.m
- cat_spm_preproc_write.m
- cat_spm_preproc_write8.m
- cat_spm_preproc8.m
- cat_spm_results_ui.m
- cat_spm_shoot_template.m
- cat_spm_smoothto8bit.m
- cat_stat_analyze_ROIs.m
- cat_stat_calc_stc.m
- cat_stat_check_cov_old.m
- cat_stat_check_SPM.m
- cat_stat_confplot_spm.m
- cat_stat_coord_diff.m
- cat_stat_cva_ui.m
- cat_stat_diff.m
- cat_stat_getCSVXMLfield.m
- cat_stat_histth.m
- cat_stat_homogeneity.m
- cat_stat_IQR.m
- cat_stat_kmeans.m
- cat_stat_marks.m
- cat_stat_nanmean.m
- cat_stat_nanmedian.m
- cat_stat_nanstat1d.m
- cat_stat_nanstd.m
- cat_stat_nansum.m
- cat_stat_orth_nuisance.m
- cat_stat_polynomial.m
- cat_stat_quality_measures.m
- cat_stat_showslice_all.m
- cat_stat_spm.m
- cat_stat_spm2x.m
- cat_stat_svd.m
- cat_stat_TIV.m
- cat_surf_avg.m
- cat_surf_calc.m
- cat_surf_coregvol2surf.m
- cat_surf_create_TPM_hull_surface.m
- cat_surf_createCS_fun.m
- cat_surf_createCS.m
- cat_surf_createCS2.m
- cat_surf_createCS4.m
- cat_surf_display.m
- cat_surf_epivolsurf.m
- cat_surf_flipsides.m
- cat_surf_flipvalues.m
- cat_surf_fun.m
- cat_surf_GI3D.m
- cat_surf_gyrification.m
- cat_surf_info.m
- cat_surf_laterality_index.m
- cat_surf_load.m
- cat_surf_map_atlas.m
- cat_surf_max.m
- cat_surf_parameters.m
- cat_surf_rename.m
- cat_surf_render.m
- cat_surf_render2.m
- cat_surf_renderv.m
- cat_surf_resamp_freesurfer.m
- cat_surf_resamp.m
- cat_surf_results.m
- cat_surf_scaling.m
- cat_surf_smooth.m
- cat_surf_smoothr.c
- cat_surf_smoothr.mexa64
- cat_surf_smoothr.mexmaca64
- cat_surf_smoothr.mexmaci64
- cat_surf_smoothr.mexw64
- cat_surf_surf2roi.m
- cat_surf_vol2surf.m
- cat_surf_vx2surf.m
- cat_system.m
- cat_tst_BWPsliceartifact.m
- cat_tst_calc_kappa.m
- cat_tst_cattest.m
- cat_tst_CJV.m
- cat_tst_qa_cleaner.m
- cat_tst_qa_normer.m
- cat_tst_staple_multilabels.m
- cat_tst_unittests.m
- cat_update.m
- cat_vbdist.c
- cat_vbdist.m
- cat_vbdist.mexa64
- cat_vbdist.mexmaca64
- cat_vbdist.mexmaci64
- cat_vbdist.mexw64
- cat_vbdist3.c
- cat_vbdist3.mexa64
- cat_vbdist3.mexmaca64
- cat_vbdist3.mexmaci64
- cat_vbdist3.mexw64
- cat_version.m
- cat_vol_addtruecolourimage.m
- cat_vol_approx.m
- cat_vol_avg.m
- cat_vol_correct_slice_scaling.m
- cat_vol_createMPM.m
- cat_vol_createTPM.m
- cat_vol_ctype.m
- cat_vol_defs.m
- cat_vol_display_label.m
- cat_vol_div.m
- cat_vol_downcut.c
- cat_vol_downcut.m
- cat_vol_downcut.mexa64
- cat_vol_downcut.mexmaca64
- cat_vol_downcut.mexmaci64
- cat_vol_downcut.mexw64
- cat_vol_eidist.c
- cat_vol_eidist.m
- cat_vol_eidist.mexa64
- cat_vol_eidist.mexmaca64
- cat_vol_eidist.mexmaci64
- cat_vol_eidist.mexw64
- cat_vol_eikonal3.mexa64
- cat_vol_eikonal3.mexmaci64
- cat_vol_eikonal3.mexw64
- cat_vol_findfiles.m
- cat_vol_genus0.c
- cat_vol_genus0.m
- cat_vol_genus0.mexa64
- cat_vol_genus0.mexmaca64
- cat_vol_genus0.mexmaci64
- cat_vol_genus0.mexw64
- cat_vol_glassbrain.m
- cat_vol_grad.m
- cat_vol_gradient3.c
- cat_vol_gradient3.mexa64
- cat_vol_gradient3.mexmaca64
- cat_vol_gradient3.mexmaci64
- cat_vol_gradient3.mexw64
- cat_vol_groupwise_ls.m
- cat_vol_headtrimming.m
- cat_vol_imcalc.m
- cat_vol_img2mip.m
- cat_vol_inpaint.m
- cat_vol_interp3f.cpp
- cat_vol_interp3f.m
- cat_vol_interp3f.mexa64
- cat_vol_interp3f.mexmaca64
- cat_vol_interp3f.mexmaci64
- cat_vol_interp3f.mexw64
- cat_vol_iscale.m
- cat_vol_iscaling.m
- cat_vol_laplace3.c
- cat_vol_laplace3.m
- cat_vol_laplace3.mexa64
- cat_vol_laplace3.mexmaca64
- cat_vol_laplace3.mexmaci64
- cat_vol_laplace3.mexw64
- cat_vol_laplace3R.c
- cat_vol_laplace3R.m
- cat_vol_laplace3R.mexa64
- cat_vol_laplace3R.mexmaca64
- cat_vol_laplace3R.mexmaci64
- cat_vol_laplace3R.mexw64
- cat_vol_laterality_index.m
- cat_vol_localstat.c
- cat_vol_localstat.m
- cat_vol_localstat.mexa64
- cat_vol_localstat.mexmaca64
- cat_vol_localstat.mexmaci64
- cat_vol_localstat.mexw64
- cat_vol_maskimage.m
- cat_vol_median3.c
- cat_vol_median3.m
- cat_vol_median3.mexa64
- cat_vol_median3.mexmaca64
- cat_vol_median3.mexmaci64
- cat_vol_median3.mexw64
- cat_vol_median3c.c
- cat_vol_median3c.m
- cat_vol_median3c.mexa64
- cat_vol_median3c.mexmaca64
- cat_vol_median3c.mexmaci64
- cat_vol_median3c.mexw64
- cat_vol_mimcalc.m
- cat_vol_morph.m
- cat_vol_mp2rage.m
- cat_vol_nanmean3.m
- cat_vol_nonlin_coreg_multi_run.m
- cat_vol_nonlin_coreg.m
- cat_vol_partvol.m
- cat_vol_partvol1639.m
- cat_vol_pbt.m
- cat_vol_pbtp.c
- cat_vol_pbtp.m
- cat_vol_pbtp.mexa64
- cat_vol_pbtp.mexmaca64
- cat_vol_pbtp.mexmaci64
- cat_vol_pbtp.mexw64
- cat_vol_pbtsimple.m
- cat_vol_pbtsimpleCS4.m
- cat_vol_pbtv.cpp
- cat_vol_pbtv.mexmaci64
- cat_vol_qa.m
- cat_vol_qa201602.m
- cat_vol_qa201901.m
- cat_vol_qa201901x.m
- cat_vol_qa202110.m
- cat_vol_qa202110x.m
- cat_vol_qa202205.m
- cat_vol_qa202207b.m
- cat_vol_qa202310.m
- cat_vol_qa202412.m
- cat_vol_reduceRes.m
- cat_vol_resize.m
- cat_vol_ROI_summarize.m
- cat_vol_ROIval.c
- cat_vol_ROIval.m
- cat_vol_ROIval.mexmaci64
- cat_vol_sample.m
- cat_vol_sanlm.m
- cat_vol_sanlm2.m
- cat_vol_savg.m
- cat_vol_series_align.m
- cat_vol_set_com.m
- cat_vol_simgrow.c
- cat_vol_simgrow.m
- cat_vol_simgrow.mexa64
- cat_vol_simgrow.mexmaca64
- cat_vol_simgrow.mexmaci64
- cat_vol_simgrow.mexw64
- cat_vol_slice_overlay_rgb_ui.m
- cat_vol_slice_overlay_ui.m
- cat_vol_slice_overlay.m
- cat_vol_smooth3X.m
- cat_vol_tfce.m
- cat_vol_urqio.m
- CAT.m
- CAT12-Manual-Word-Old.docx
- CAT12-Manual.pdf
- cat12.m
- cat12.sh
- CATxml.csv
- CHANGES.txt
- check_pipeline_homogeneity.m
- check_pipeline_ROIs.m
- check_pipeline.sh
- clang++_maca64_legacy.xml
- compile_standalone.txt
- compile_test_debug.m
- compile.m
- Contents_info.txt
- Contents.m
- COPYING
- cp_binaries.sh
- distribute_to_server.sh
- ds.m
- genus0.c
- genus0.h
- glass_brain.mat
- HowTo_Map_fMRI_Layers.txt
- HowTo_PET2SurfaceAtlas.txt
- INSTALL_info.txt
- julichbrain3.csv
- Kmeans.c
- KmeansMex.c
- KmeansMex.m
- Makefile
- MBeautify.txt
- MrfPrior.c
- optimizer3d.c
- optimizer3d.h
- ornlm_float.c
- OverlayCAT12_cg.docx
- Pve.c
- README.mdGood: README is present.Good: README is well structured with multiple sections.Issue: No screenshots or images in the README (−20 pts).Fix: Add a GIF, screenshot, or logo image. It is the fastest way to show what your project does.Issue: README has no code examples (−15 pts).Fix: Show a quick-start snippet so contributors can see what using your project looks like.Good: README links to a live demo or deployed app.Issue: No status badges in the README (−10 pts).Fix: Add CI/build status badges from shields.io or your CI provider to signal project health.Good: README documents how to install the project.Issue: No run or usage instructions found (−45 pts).Fix: Add a section showing how to start or use the project.
- sanlm_float.c
- slice_overlay.m
- sliderPanel.m
- SplineSmooth.cc
- spm_CAT.m
- spm_cat12.m
- spm_diffeo_old.c
- spm_diffeo_old.mexa64
- spm_diffeo_old.mexmaci64
- spm_diffeo_old.mexw64
- spm_diffeo.mexa64
- spm_diffeo.mexmaca64
- spm_diffeo.mexmaci64
- spm_diffeo.mexw64
- spm_select.m
- suit_amap.m
- tbx_cfg_cat.m
- tfceMex_pthread.c
- tfceMex_pthread.m
- tfceMex_pthread.mexa64
- tfceMex_pthread.mexmaca64
- tfceMex_pthread.mexmaci64
- tfceMex_pthread.mexw64
- tricases.h
- update_revision.sh
- vollib.c
- WarpPriors.c